A method to assess longitudinal riverine connectivity in tropical streams dominated by migratory biota

Crook, Kelly E.; Pringle, Catherine M.; Freeman, Mary C. 2009. A method to assess longitudinal riverine connectivity in tropical streams dominated by migratory data. Aquatic Conservation: Marine and Freshwater Ecosystems. 19: 714-723.

1. One way in which dams affect ecosystem function is by altering the distribution and abundance of aquatic species. 2. Previous studies indicate that migratory shrimps have significant effects on ecosystem processes in Puerto Rican streams, but are vulnerable to impediments to upstream or downstream passage, such as dams and associated water intakes where stream water is withdrawn for human water supplies. Ecological effects of dams and water withdrawals from streams depend on spatial context and temporal variability of flow in relation to the amount of water withdrawn. 3. This paper presents a conceptual model for estimating the probability that an individual shrimp is able to migrate from a stream’s headwaters to the estuary as a larva, and then return to the headwaters as a juvenile, given a set of dams and water withdrawals in the stream network. The model is applied to flow and withdrawal data for a set of dams and water withdrawals in the Caribbean National Forest (CNF) in Puerto Rico. 4. The index of longitudinal riverine connectivity (ILRC), is used to classify 17 water intakes in streams draining the CNF as having low, moderate, or high connectivity in terms of shrimp migration in both directions. An in-depth comparison of two streams showed that the stream characterized by higher water withdrawal had low connectivity, even during wet periods. Severity of effects is illustrated by a drought year, where the most downstream intake caused 100% larval shrimp mortality 78% of the year. 5. The ranking system provided by the index can be used as a tool for conservation ecologists and water resource managers to evaluate the relative vulnerability of migratory biota in streams, across different scales (reach-network), to seasonally low flows and extended drought. This information can be used to help evaluate the environmental tradeoffs of future water withdrawals.

Predator–prey interactions in river networks: comparing shrimp spatial refugia in two drainage basins

W. H. MCDOWELL. 2009. Predator-prey interactions in
river networks: comparing shrimp spatial refugia in two
drainage basins. Freshwater Biology 54:450–465.

1. Analysis of drainage networks provides a framework to evaluate the densities and distributions of prey species relative to locations of their predators. Upstream migration by diadromous shrimp (Atya lanipes and Xiphocaris elongata) during their life cycle provides access to headwater refugia from fish predation, which is intense in estuaries and coastal rivers. 2. We postulate that geomorphic barriers (such as large, steep waterfalls >3.5 m in height), can directly limit the distribution of predatory fishes and, indirectly, affect the densities of their prey (freshwater shrimps) in headwater streams. 3. We compared densities of shrimp in pools above and below waterfalls, in four headwater tributaries in two river basins of the Luquillo Mountains of northeastern Puerto Rico. We measured shrimp densities twice a year over 8 years (1998–2005) in Prieta, Toronja, Bisley 3 and Bisley 5 streams, which differ in drainage network positions relative to steep waterfalls in Rı´o Espı´ritu Santo and Rı´o Mameyes. 4. Predatory fishes are absent in the Prieta and Toronja pools and present in Bisely 3 and in lower Bisley 5 pools. Atya lanipes and X. elongata rarely occur in the Bisley streams where predatory fishes are present but these shrimps are abundant in Prieta and Toronja, streams lacking predatory fishes. 5. The mean carapace length of X. elongata is longer in pools where fish are present (Bisley 3 and lower Bisley 5) than in pools lacking fish (Prieta, Toronja, Upper Bisley 5). The increased body size is primarily due to significantly longer rostrums of individuals in stream reaches with fish (below waterfall barriers) than in those reaches lacking fish (above waterfall barriers). Rostrum length may be an adaptation to avoid predation by visually feeding fishes. 6. Atya lanipes and X. elongata distributions and densities were predicted primarily by drainage network position relative to the presence or absence of predatory fishes. High, steep waterfalls effectively impeded fish from moving upstream and created a spatial refuge. Xiphocaris elongata may rely on size refugia (longer rostrum) to minimize predation where spatial refugia are lacking.

Immigration history of amphidromous species on a Greater Antillean island

Cook, Benjamin D.; Pringle, Catherine M.; Hughes, Jane M. 2010. Immigration history of amphidromous species on a Greater Antillean island. Journal of Biogeography. 37: 270-277.

Aim To use molecular data to test for dispersal structuring in the immigration history of an amphidromous community on an island. Location The Caribbean island of Puerto Rico. Methods Mitochondrial DNA sequences were obtained from 11 amphidromous species, including shrimps, fish and a gastropod, sampled from throughout the island. The timing of population expansion (TE) in each species was calculated using nucleotide variation and molecular clock dating methods. The order of species accumulation was then reconstructed (oldest to most recent estimate for TE), and groups of species with non-overlapping estimates for TE were identified. The temporal span and average immigration rate for each group were calculated and compared with expectations of two previously published models of island immigration [the ‘dispersal-structured model of island recolonization’ (Whittaker & Jones, Oikos, 1994, 69, 524–529), which predicts short phases of rapid immigration followed by extended phases with relatively slow immigration rates; and the ‘colonization window hypothesis’ (Carine, Taxon, 2005, 54, 895–903), which suggests that opportunities for island colonization are temporally constrained to discrete waves of colonization]. Results The molecular data indicated the immigration history of Puerto Rican amphidromous fauna from the late Pleistocene through the Holocene and identified two groups of species with non-overlapping estimates for TE and one group that overlapped with the other two groups. The temporal span, average immigration rate and lack of discreteness between all three groups indicated a continuum of immigration rather than distinct phases of species arrivals. Main conclusions This study did not support the expectations of the immigration models and suggested that amphidromous species from Puerto Rico comprise a single class of marine-based dispersers. The immigration sequence we report probably reflects a recolonization chronology in this community, in keeping with the notion of species turnover through time. Four areas of future research into the immigration history of amphidromous species on islands are identified, and indicated the possibility that equilibrium processes govern long-term community change in amphidromous biota on islands

Biotic and abiotic controls on the ecosystem significance of consumer excretion in two contrasting tropical streams

Biotic and abiotic controls on the ecosystem significance of consumer excretion in two contrasting tropical streams


Article first published online: 14 JUN 2010

DOI: 10.1111/j.1365-2427.2010.02461.x

1. Excretion of nitrogen (N) and phosphorus (P) is a direct and potentially important role for aquatic consumers in nutrient cycling that has recently garnered increased attention. The ecosystem-level significance of excreted nutrients depends on a suite of abiotic and biotic factors, however, and few studies have coupled measurements of excretion with consideration of its likely importance for whole-system nutrient fluxes. 2. We measured rates and ratios of N and P excretion by shrimps (Xiphocaris elongata and Atya spp.) in two tropical streams that differed strongly in shrimp biomass because a waterfall excluded predatory fish from one site. We also made measurements of shrimp and basal resource carbon (C), N and P content and estimated shrimp densities and ecosystem-level N and P excretion and uptake. Finally, we used a 3-year record of discharge and NH4-N concentration in the high-biomass stream to estimate temporal variation in the distance required for excretion to turn over the ambient NH4-N pool. 3. Per cent C, N, and P body content of Xiphocaris was significantly higher than that of Atya. Only per cent P body content showed significant negative relationships with body mass. C:N of Atya increased significantly with body mass and was higher than that of Xiphocaris. N : P of Xiphocaris was significantly higher than that of Atya. 4. Excretion rates ranged from 0.16–3.80 lmol NH4-N shrimp)1 h)1, 0.23–5.76 lmol total dissolved nitrogen (TDN) shrimp)1 h)1 and 0.002–0.186 lmol total dissolved phosphorus (TDP) shrimp)1 h)1. Body size was generally a strong predictor of excretion rates in both taxa, differing between Xiphocaris and Atya for TDP but not NH4-N and TDN. Excretion rates showed statistically significant but weak relationships with body content stoichiometry. 5. Large between-stream differences in shrimp biomass drove differences in total excretion by the two shrimp communities (22.3 versus 0.20 lmol NH4-N m)2 h)1, 37.5 versus 0.26 lmol TDN m)2 h)1 and 1.1 versus 0.015 lmol TDP m)2 h)1), equivalent to 21% and 0.5% of NH4-N uptake and 5% and <0.1% of P uptake measured in the high- and lowbiomass stream, respectively. Distances required for excretion to turn over the ambient NH4-N pool varied more than a hundredfold over the 3-year record in the high-shrimp stream, driven by variability in discharge and NH4-N concentration. 6. Our results underscore the importance of both biotic and abiotic factors in controlling consumer excretion and its significance for nutrient cycling in aquatic ecosystems. Differences in community-level excretion rates were related to spatial patterns in shrimp biomass dictated by geomorphology and the presence of predators. Abiotic factors also had important effects through temporal patterns in discharge and nutrient concentrations. Future excretion studies that focus on nutrient cycling should consider both biotic and abiotic factors in assessing the significance of consumer excretion in aquatic ecosystems.

Metacommunity structure of tropical forest along an elevation gradient in Puerto Rico

Barone, J. A. et al. 2008. Metacommunity structure of tropical forest along an elevational gradient in Puerto Rico. – J. Trop. Ecol. 24: 525–534.

The development of metacommunity theory, which suggests that the diversity and composition of communities is influenced by interactions with other communities, has produced new tools for evaluating patterns of community change along environmental gradients. These techniques were used to examine how plant communities changed along elevation gradients in montane tropical forests. Two transects of 0.1-ha vegetation plots were established every 50 m in elevation in the mountains of eastern Puerto Rico. The transects ranged from 300 m to 1000 m asl and 400 m to 900 m. In each plot, all free-standing woody stems greater than 1 cm in diameter at 130 cm in height were marked, measured and identified. Additional data on three similar transects were taken from the literature. The upper or lower boundaries of species ranges were significantly clumped along all five transects. Coherence, a measure of the number of gaps in species distributions, was also significant across all transects, and three transects showed significant, albeit low, nestedness. Four sites had significant species turnover. These results suggest that metacommunity techniques can be useful in searching for patterns of community change present in montane tropical forests.

Valuing water and sediment tradeoffs between forest and pasture in montane tropical environments in Puerto Rico

Gingold, E. A. (2007). Valuing water and sediment tradeoffs between forest and pasture in montane tropical environments in Puerto Rico. University of Pennsylvania Scholarly Commons. Retrieved 3/20/11 from

Effective land use policy must weigh both the private and public costs and benefits of converting forests to alternate land uses. This project assesses the private and public impacts of forest to pasture conversion in the montane regions of Puerto Rico. Due to the island's water supply problems, hydrologic ecosystem services were found to be the most significant resource impacted. The value of carbon sequestration lost through conversion was found to range from 9-36 $/ha/yr. The value of other ecosystem services, notably recreation and biodiversity, were found to be highly significant in certain localities but small on an average island-wide basis. The model created in this study found that the public costs of reservoir sedimentation resulting from increased erosion and the higher incidence of landslides on pastures outweigh the public benefits of increased runoff in areas where with slopes of approximately 21o and a Revised Universal Soil Loss Equation topographic factor greater than 6.5. Results were highly dependent on the amount of sediment that is transported from the pasture to the reservoir (e.g. the sediment delivery ratio) and the marginal value of water. The private returns to pasture (400 $/ha/yr) were generally found to be greater than the sum of the public costs. The results suggest that policy-makers should take local environmental variation into account when designing forest conservation strategies. Policies should target areas with high slopes and high sediment delivery ratios.

Topographic control of soil microbial activity: a case study of denitrifiers

Florinsky, 1. V., S. McMahon, and D. L. Burton. 2004.
Topographic control of soil microbial activity: a case study of
denitrifiers. Geoderma 119:33-53.

Topography may affect soil microbial processes, however, the use of topographic data to model and predict the spatial distribution of soil microbial properties has not been widely reported. We studied the effect of topography on the activity of denitrifiers under different hydrologic conditions in a typical agroecosystem of the northern grasslands of North America using digital terrain modelling (DTM). Three data sets were used: (1) digital models of nine topographic attributes, such as elevation, slope gradient and aspect, horizontal, vertical, and mean land surface curvatures, specific catchment area, topographic, and stream power indices; (2) two soil environmental attributes (soil gravimetric moisture and soil bulk density); and (3) six attributes of soil microbial activity (most probable number of denitrifiers, microbial biomass carbon content, denitrifier enzyme activity, nitrous oxide flux, denitrification rate, and microbial respiration rate). Linear multiple correlation, rank correlation, circular–linear correlation, circular rank correlation, and multiple regression were used as statistical analyses. In wetter soil conditions, topographically controlled and gravity-driven supply of nutritive materials to microbiota increased the denitrification rate. Spatial differentiation of the denitrification rate and amount of denitrifying enzyme in the soil was mostly effected by redistribution and accumulation of soil moisture and soil organic matter down the slope according to the relative position of a point in the landscape. The N2O emission was effected by differentiation and gain of soil moisture and organic matter due to the local geometry of a slope. The microbial biomass, number of denitrifiers, and microbial respiration depended on both the local geometry of a slope and relative position of a point in the landscape. In drier soil conditions, although denitrification persisted, it was reduced and did not depend on the spatial distribution of soil moisture and thus land surface morphology. This may result from a reduction in soil moisture content below a critical level sufficient for transient induction of denitrification but not sufficient to preserve spatial patterns of the denitrification according to relief. Digital terrain models can be used to predict the spatial distribution of the microbial biomass and amount of denitrifying enzyme in the soil. The study demonstrated a feasibility of applying digital terrain modelling to investigate relations of other groups of soil microbiota with topography and the system ‘topography–soil microbiota’ as a whole.

Tragedy of the commons in plant water use

Zea-Cabrera, E., Y. Iwasa, S. Levin, and I. Rodrı´guez-Iturbe (2006), Tragedy of the commons in plant water use, Water
Resour. Res., 42, W06D02, doi:10.1029/2005WR004514.

In this paper we address the following question: how can efficient water use strategies evolve and persist when natural selection favors aggressive but inefficient individual water use? A tragedy of the commons, in which the competitive evolutionary outcome is lower than the ecosystem optimum (in this case defined as maximum productivity), arises because of (1) a trade-off between resource uptake rate and resource use efficiency and (2) the open access character of soil water as a resource. Competitive superiority is determined by the lowest value of the steady state soil moisture, which can be minimized by increasing water uptake or by increasing drought tolerance. When the competing types all have the same drought tolerance, the most aggressive water users exclude efficient ones, even though they produce a lower biomass when in monoculture. However, plants with low water uptake can exclude aggressive ones if they have enough drought tolerance to produce a lower steady state soil moisture. In that case the competitive superior is also the best monoculture, and there is no tragedy of the commons. Spatial segregation in soil moisture dynamics favors the persistence of conservative water use strategies and the evolution of lower maximum transpiration rates. Increasing genetic relatedness between competing plants favors the evolution of conservative water use strategies. Some combinations of soil moisture spatial segregation and intensity of kin selection may favor the evolution and maintenance of multiple types of plant water use. This occurs because a cyclical pattern of species replacement can arise where no single type can exclude all other types.

The Role of Disturbance, Topography, and Forest Structure in the Development of a Montane Forest Landscape

The Role of Disturbance, Topography, and Forest Structure in the Development of a Montane Forest Landscape
Keith S. Hadley
Bulletin of the Torrey Botanical Club
Vol. 121, No. 1 (Jan. - Mar., 1994), pp. 47-61

Human set fires beginning in the mid 1800s and repeated insect outbreaks of western spruce budworm (Choristoneura occidentalis Free.) and Douglas-fir bark beetle (Dendroctonus pseudotsugae Hopk.) during the past 50 years have resulted in a dramatic change in the montane (<ca. 2900 m) forest landscape of the Colorado Front Range. Here, I examine the historical and spatial relationship between these disturbance agents and topography using stand structure and dendroecological data from 38 contiguous stands. These data suggest that aspect and relief are important factors determining the spatial and temporal patterns of disturbance, succession, and rates of stand development. The rate of postfire stand development and hence, subsequent stand susceptibility to insect outbreaks appears to be related to aspect. North-facing stands experience rapid postfire development and greater susceptibility to insect attack due to higher host tree densities, larger mean tree size, and a more uniform distribution of host trees over larger contiguous areas. Postfire stand recovery on south facing slopes appears to be slower and stand susceptibility to insect attack is less due to lower host densities, smaller mean tree size, and a less uniform distribution of host trees over smaller areas. Relief, independent of aspect, enhances the structural diversity of the forest landscape by promoting irregular burn patterns and intensities, thus creating a fire-induced mosaic of different aged stands. As these different aged stands continue to grow older, they reach a stage of development susceptible to insect outbreaks at different times. As a result, insect-induced changes in the structural characteristics of the current landscape emulate fire-induced landscape patterns that developed largely due to human activities beginning in the 1860s.

Exploring Potential Spatial-Temporal Links Between Fluvial Geomorphology and Nutrient-Periphyton Dynamics in Streams Using Simulation Models

Doyle, MW, Stanley EH. 2006. Exploring potential spatial-temporal links between fluvial geomorphology and nutrient-periphyton dynamics in streams using simulation models. Annals of the Association of American Geographers. 96:687-698.

Understanding stream ecosystem processes necessitates an awareness of not only the physical, chemical, and biological systems, but also how these separate systems interact with each other. Using a nutrient retention and periphyton growth model coupled to a dynamic geomorphic template, we explore the potential role of channel shape, slope, and sediment texture on downstream nutrient retention, and attempt to determine if physical changes alone can drive or influence changes in nutrient-periphyton dynamics. The overall model results suggest there is a strong potential control of both nutrient retention and periphyton biomass by channel morphology. For example, with constant biochemical process rates, geomorphic variations alone could alter spatial distribution of nutrient retention over a 4-km study reach by between 11 percent and 52 percent. These results suggest channel geomorphology has a potentially strong influence on both nutrient retention and basal food sources in streams. Key Words: biogeochemistry, ecohydrology, ecosystem ecology, river restoration.
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