Predicted Tat Substrate and Component Numbers in a Diverse Group of Prokaryotes

The Pohlschroder Lab

Department of Biology

University of Pennsylvania

click on an organism name to view a list of its putative Tat substrates

					Tat components identified (NCBI gi number(s) listed)
Organism	Domain	Phylum	ORFs	TATFIND 1.2 positive proteins	A/E	B	C
Streptomyces coelicolor A3(2)	bac	Actinobacteria	7899	145	21220129	-	21220128
Mesorhizobium loti	bac	Proteobacteria (alpha)	7279	95	13471183	-	13471181
Sinorhizobium meliloti	bac	Proteobacteria (alpha)	6206	94	15965282	15965283	15965284
Caulobacter crescentus	bac	Proteobacteria (alpha)	3737	88	16126246	16126245	16126244
Ralstonia solanacearum	bac	Proteobacteria (beta)	5116	71	17547661	17547660	17547659
Halobacterium NRC-1	archaea	Euryarchaeota	2446	68	15789960 15789616?	-	15791081 15791080
Pseudomonas aeruginosa	bac	Proteobacteria (gamma)	5567	57	15600261	15600262	15600263
Xanthomonas campestris3391	bac	Proteobacteria (gamma)	4181	55	21233515	21233514	21233513
Agrobacterium tumefaciens	bac	Proteobacteria (alpha)	5299	51	15889013	15889012	15889011
Xanthomonas axonopodis306	bac	Proteobacteria (gamma)	4312	50	21244935	21244934	21244933
Escherichia coli K12	bac	Proteobacteria (gamma)	4279	34	16131685 16128610	16131686	16131687
Escherichia coli O157-H7 EDL933	bac	Proteobacteria (gamma)	5335	33	15804428 15800341	15804429	15804430
Salmonella typhimuriumLT2	bac	Proteobacteria (gamma)	4559	33	16767243 16764009	16422539	16767245
Escherichia coli O157-H7	bac	Proteobacteria (gamma)	5361	32	15834020 15829919	15834021	15834022
Mycobacterium tuberculosis H37Rv	bac	Actinobacteria	3927	31	15609231	-	15609230
Nostoc sp.PCC7120	bac	Cyanobacteria	6129	31	17228340 17231370	-	17229948
Mycobacterium tuberculosis CDC1551	bac	Actinobacteria	4187	29	15841585	-	15841584
Salmonella enterica Typhi	bac	Proteobacteria (gamma)	4768	28	16762161 16759591	16762160	16762159
Deinococcus radiodurans	bac	Deinococcus-Thermus	2997	22	15805831 15805323	-	15805832
Synechocystis sp. PPC6803	bac	Cyanobacteria	3167	21	16329622 16330067	-	16331434
Yersinia pestis	bac	Proteobacteria (gamma)	4083	19	16123912 16122810	16123911	16123910
Brucella melitensis	bac	Proteobacteria (alpha)	3199	19	17987367	-	17987366
Xylella fastidiosa 9a5c	bac	Proteobacteria (gamma)	2768	17	15837166	15837165	15837164
Aquifex aeolicus	bac	Aquificae	1529	15	15605663 15605662	-	15606489
Corynebacterium glutamicum	bac	Actinobacteria	3041	15	19554243 19552705	-	21324258
Pyrobaculum aerophilum	archaea	Euryarchaeota	2605	14	18312703	-	18312704
Neisseria meningitidis Z2491	bac	Proteobacteria (beta)	2065	12	15793779	15793778	15793777
Pasteurella multocida	bac	Cyanobacteria	2015	12	15603554	15603555	15603556
Campylobacter jejuni	bac	Proteobacteria (epsilon)	1654	11	15792500	15791939	15791938
Neisseria meningitidis MC58	bac	Proteobacteria (beta)	2079	11	15677995	15676505	15676504
Haemophilus influenza	bac	Proteobacteria (gamma)	1714	9	1074302	16273632	16272152
Archaeoglobus fulgidus	archaea	Euryarchaeota	2420	9	11499638 11498390	-	11499107 11498942
Mycobacterium leprae	bac	Actinobacteria	2720	9	15827692	-	12644313
Vibrio cholerae	bac	Proteobacteria (gamma)	3835	7	15640118 15601293	15640119	15640120
Bacillus subtilis	bac	Firmicutes	4112	7	16077665 16078834 16077332	-	16077666 16077333
Aeropyrum pernix	archaea	Crenarchaeota	1840	7	14602211 14602210	-	14601877
Methanosarcina mazei Goe1	archaea	Euryarchaeota	3371	6	21228686 21228685	-	21228687 21228688
Treponema pallidum	bac	Spirochaetes	1036	6	-	-	-
Bacillus halodurans	bac	Firmicutes	4066	5	15613115 15616467	-	15613116 15616468
Methanosarcina acetivorans str.C2A	archaea	Euryarchaeota	4540	5	20092296 20092297	-	20092298 20092299
Sulfolobus solfataricus	archaea	Crenarchaeota	2977	5	15897408 15897409 15899815	-	15899816 15897410
Chlorobium tepidum TLS	bac	Chlorobi	2252	5	21674434 21674336	-	21674032
Pyrococcus horikoshii	archaea	Euryarchaeota	1801	5	-	-	-
Sulfolobus tokodaii	archaea	Crenarchaeota	2826	4	15922944 15920817	-	15920818
Helicobacter pylorii 26695	bac	Proteobacteria (epsilon)	1576	3	15644948	15645674	15645675
Helicobacter pylorii J99	bac	Proteobacteria (epsilon)	1491	3	15611372	15611433	15611432
Clostridium perfringens	bac	Firmicutes	2723	3	-	-	-
Pyrococcus furiosus DSM3638	archaea	Euryarchaeota	2065	3	-	-	-
Thermotoga maritima	bac	Thermotogae	1858	3	-	-	-
Listeria innocua	bac	Firmicutes	3043	2	16799458	-	16799457
Staphylococcus aureus Mu50	bac	Firmicutes	2714	2	15923337	-	15923336
Staphylococcus aureusMW2	bac	Firmicutes	2632	2	21282052	-	21282051
Staphylococcus aureusN315	bac	Firmicutes	2625	2	15926048	-	15926047
Thermoplasma acidphilum	archaea	Euryarchaeota	1482	2	16082660	-	16082231
Thermoplasma volcanium	archaea	Euryarchaeota	1500	2	14324590	-	13541201
Chlamydia trachomatis	bac	Chlamydiae	895	2	-	-	-
Chlamydophila pneumoniae AR39	bac	Chlamydiae	1112	2	-	-	-
Chlamydophila pneumoniae CWL029	bac	Chlamydiae	1054	2	-	-	-
Pyrococcus abyssi	archaea	Euryarchaeota	1769	2	-	-	-
Listeria monocytogenes EGD-e	bac	Firmicutes	2846	1	16802407	-	16802406
Rickettsia conorii	bac	Proteobacteria (alpha)	1374	1	15893083	-	15893138
Rickettsia prowazekii	bac	Proteobacteria (alpha)	835	1	15604583	-	15604614
Chlamydia muridarum	bac	Chlamydiae	909	1	-	-	-
Chlamydophila pneumoniae J138	bac	Chlamydiae	1069	1	-	-	-
Clostridium acetobutylicum	bac	Firmicutes	3848	1	-	-	-
Lactococcus lactis subsp. lactis	bac	Firmicutes	2267	1	-	-	-
Methanothermobacter thermautotrophicus	archaea	Euryarchaeota	1873	1	-	-	-
Streptococcus pneumoniaeR6	bac	Firmicutes	2043	1	-	-	-
Streptococcus pyogenes	bac	Firmicutes	1697	1	-	-	-
Streptococcus pyogenes MGAS8232	bac	Firmicutes	1845	1	-	-	-
Thermoanaerobacter tengcongensis	archaea	Euryarchaeota	2588	1	-	-	-
Buchnera aphidicola	bac	Proteobacteria (gamma)	545	-	-	-	-
Buchnera sp. APS	bac	Proteobacteria (gamma)	564	-	-	-	-
Fusobacterium nucleatum 25586	bac	Fusobacteria	2067	-	-	-	-
Metanococcus janaschii	archaea	Euryarchaeota	1729	-	-	-	-
Methanopyrus kandleri AV19	archaea	Euryarchaeota	1687	-	20094637	-	-
Mycoplasma genitalium	bac	Firmicutes	484	-	-	-	-
Mycoplasma pneumoniae	bac	Firmicutes	689	-	-	-	-
Mycoplasma pulmonis	bac	Firmicutes	782	-	-	-	-
Streptococcus pneumoniaeTIGR4	bac	Firmicutes	2094	-	-	-	-
Ureaplasma urealyticum	bac	Firmicutes	614	-	-	-	-
Borrelia burgdorferi	bac	Spirochaetes	1638	-	-	-	-

Please address comments to Wes Rose