Calabi-Simons Professor in Mathematics and Biology

Department of Mathematics

Department of Biology

School of Arts and Sciences

University of Pennsylvania

email: y1mori@sas.upenn.edu

Office: DRL 4N20 (Math), Levin 352 (Biology)

CV: pdf

Mathematical Biology, Physiology and Biophysics.

Applied and Numerical Analysis.

Fall 2020

BIOL/AMCS 568

E. Garcia-Juarez, Y. Mori and R. Strain *The Peskin Problem with Viscosity Contrast*

submitted.

Q. Su, A. McAvoy, Y. Mori and J. B. Plotkin
*Evolution of prosocial behavior in multilayer populations*

submitted.

Y. Mori and L. Ohm
*Accuracy of slender body theory in approximating force exerted by thin fiber on viscous fluid*

submitted.

J. Ma, M. Do, M. A. Le Gros, C. S. Peskin, C. A. Larabell, Y. Mori, and S. A. Isaacson,
*Strong Intracellular Signal Inactivation Produces Sharper and more Robust Signaling from Cell Membrane to Nucleus*

PLOS Computational Biology, published online, 2020.

Y. Li, K. Konstantopoulos, R. Zhao, Y. Mori and S. X. Sun
*The importance of water and hydraulic pressure in cell dynamics*

Journal of Cell Science, 133(20), 2020.

Y. Mori and L. Ohm
*An error bound for the slender body approximation of a thin, rigid fiber sedimenting in Stokes flow*

Research in Mathematical Sciences, 7(8), 2020.
pdf

Y. Li, L. Yao, Y. Mori and S.X. Sun
*On the energy efficiency of cell migration in diverse physical environments*

Proceedings of the National Academy of Sciences, 116 (48) 23894-23900, 2019.

A. Tuttle, J. Riera-Diaz and Y. Mori
*A computational study on the role of glutamate and NMDA receptors on cortical spreading depression using a multidomain electrodiffusion model*

PLOS Computational Biology, 15 (12):e1007455, 2019.
pdf

Y. Mori, L. Ohm and D. Spirn,
*Theoretical Justification and Error Analysis for Slender Body Theory with Free Ends*

Archive for Rational Mechanics and Analysis, 235 (3), 1905-1978, 2019.
pdf

Y. Mori, L. Ohm and D. Spirn, * Theoretical justification and error analysis for slender body theory*

Communications on Pure and Applied Mathematics, 73 (6), 1235-1314, 2020.
pdf

Y.N. Young, Y. Mori and M. Miksis, *Slightly deformable Darcy drop in linear flows*

Physical Reviews Fluids, 4, 063601, 2019.

A. Moshkforoush, P.A. Valdes-Hernandez, D.E. Rivera, Y. Mori and J. Riera-Diaz,
*
waveCSD: A method for estimating transmembrane currents originated from propagating neuronal activity
in the neocortex: Application to study cortical spreading depression*

Journal of Neuroscience Methods 307, 106-124, 2018.

Y. Mori and Y.N. Young, * From Electrodiffusion Theory to the Electrohydrodynamics of Leaky Dielectrics through the Weak Electrolyte Limit*

Journal of Fluid Mechanics 855, 67-130 2018.
pdf

Y. Mori, A. Rodenberg and D. Sprin,* Well-posedness and global behavior of the Peskin problem
of an elastic filament in Stokes flow*

Communications on Pure and Applied Mathematics, 72 (5), 887-980, 2018.
pdf

L. Yao and Y. Mori, *A numerical method for osmotic water flow and
solute diffusion with deformable membrane boundaries in two spatial
dimension*

Journal of Computational Physics, 350, 728-746, 2017.
pdf

L. Yao, M.C. Calderer, Y. Mori and R. Siegel, *Rhythmogenic Drug Delivery: Modeling, Analysis and Numerical Simulation*

SIAM Journal of Applied Mathematics, 77(2), 565-592, 2017.
pdf

Rosemary O'Connell and Y. Mori *Effects of Glia in a Triphasic
Continuum Model of Cortical Spreading Depression*

Bulletin of Mathematical Biology, 78 (10), 1943-1967, 2016.
pdf

N. Wei, Y. Mori and E.G. Talkacheva, *The dual effect of ephaptic
coupling on cardiac conduction with heterogeneous expression of
connexin 43*

Journal of Theoretical Biology, 397, 103-114, 2016.
pdf

Y. Mori and H. Matano *Stability of Front Solutions of the Bidomain Equation*

Communications on Pure and Applied Mathematics,
69(12), 2364-2426, 2016.
pdf

A. Stinchcombe, Y. Mori and C.S. Peskin *Well-Posed Treatment of Space-Charge Layers in the Electroneutral Limit of Electrodiffusion*

Communications on Pure and Applied Mathematics, 69, 2221-2249, 2016.
pdf

Y. Li, Y. Mori and S. Sun *Flow-driven cell migraion under external electric fields*

Physical Review Letters, 115(26), 268101, 2015.
pdf

Y. Mori *A multidomain model for ionic electrodiffusion and osmosis
with an application to cortical spreading depression*

Physica D, Nonlinear Phenomena, 308, 94-108, 2015.
pdf

N. Wei, Y. Mori, and E.G. Talkacheva, *The role of short term memory and conduction velocity restitution in alternans formation*

Journal of Theoretical Biology, 367, 21-28, 2015.
pdf

T. Fai, B Griffith, Y. Mori and C.S. Peskin, *Immersed Boundary Method for Variable Viscosity and Variable Density Problems Using Fast Constant-Coefficient Linear Solvers II: Theory*

SIAM. J. Sci. Comput., 36, B589-B621, 2014.
pdf

H. Chen, M.C. Calderer and Y. Mori, *Analysis and Simulation of a model of polyelectrolyte gel in one spatial dimension*

Nonlinearity, 27, 1241-1285, 2014.pdf

Stephen D. McIntyre, Virendra Kakade, Yoichiro Mori, Elena G. Tolkacheva, *Heart rate variability and alternans formation in the heart: the role of feedback in cardiac dynamics*

Journal of Theoretical Biology, 350, 90-97, 2014.
pdf

Y. Liu and Y. Mori, *L^p convergence of the Immersed Boundary Method*

SIAM. J. Num. Anal., 52, 1, 496-514, 2014.
pdf

T. Fai, B Griffith, Y. Mori and C.S. Peskin, *Immersed Boundary Method for Variable Viscosity and Variable Density Problems Using Fast Constant-Coefficient Linear Solvers I: Numerical Method and Results*

SIAM. J. Sci. Comput., 35, B1132-B1161, 2013.pdf

Y. Mori, H. Chen, C. Micek and M.C. Calderer, *A dynamic model of polyelectrolyte gels*

SIAM Journal of Applied Mathematics, 73, 104-133, 2013.
pdf

Y. Liu and Y. Mori, *Properties of discrete delta functions and local convergence of the immersed boundary method*

SIAM Journal of Numerical Analysis, 50, 2986-3015, 2012.
pdf

Y. Mori, *Mathematical Properties of Pump-Leak Models of Cell Volume Control and Electrolyte Balance*

Journal of Mathematical Biology, Vol. 64, No. 5, p873-916, 2012,
*Erratum*, ibid.
pdf

(Typographical errors introduced by publisher corrected in Erratum.)

Y. Mori, C. Liu and R.S. Eisenberg,
*A Model of Electrodiffusion and Osmotic Water Flow and its Energetic Structure*

Physica D: Nonlinear phenomena, 240, 1835-1852, 2011.
pdf

Y. Mori, A. Jilkine and L. Edelstein-Keshet,
*Asymptotic and bifurcation analysis of wave-pinning in a reaction-diffusion model of
cell polarization*

SIAM J. Appl. Math. 71, 1401-1427, 2011.
pdf

H. Matano and Y. Mori,
*Global existence and uniqueness of a three-dimensional model of cellular electrophysiology*

Discrete and Continuous Dynamical Systems (DCDS-A),
Vol. 29, No. 4, 1573-1636, 2011.
pdf

M. Brera, J.W. Jerome, Y. Mori and R. Sacco,
*A Conservative and monotone mixed-hybridized finite element approximation of transport problems in heterogeneous domains*

Computer Methods in Applied Mechanics and Engineering,
Vol. 199, 2709-2720, 2010.
pdf

Y. Mori and C.S. Peskin. *A Numerical Method for Cellular Electrophysiology
based on the Electrodiffusion Equations with Internal Boundary Conditions
at Internal Membranes*

Communications in Applied Mathematics and Computational Science
Vol 4, No. 1, 85-134, 2009.
pdf

Y. Mori and C.S. Peskin.
*A universal programmable fiber architecture
for the representation of a general incompressible linearly
elastic material as a fiber-reinforced fluid*

Advances in Applied Mathematics
Volume 43, No. 1, pp. 75-100, July 2009.
pdf

Y. Mori, G.I. Fishman and C.S. Peskin.
*Ephaptic conduction in a cardiac strand model
with 3D electrodiffusion.*

Proc. Natl. Acad. Sci., Vol. 105, No. 17, pp. 6463-6468, 2008.
pdf

Y. Mori, A. Jilkine and L. Keshet. *Wave-pinning and Cell Polarity from a
Bistable Reaction-diffusion System*

Biophysical Journal, Vol. 94, 3684-3697, 2008.
pdf

Y. Mori. *Convergence Proof of the Velocity Field for a Stokes Flow Immersed Boundary Method*

Communications on Pure and Applied Mathematics, Vol. 61, no. 9, pp. 1213-1263, 2008.
pdf

Y. Mori and C.S. Peskin. *Implicit Second Order Immersed Boundary Methods with Boundary Mass*

Computational Methods in Applied Mechanics and Engineering, Vol. 197, pp. 2049-2067, Apr.
2008.
pdf

Y. Mori, J.W. Jerome and C.S. Peskin.
*A Three-Dimensional Model of Cellular Electrical Activity*

Bulletin of the Institute of Mathematics, Academia Sinica Volume 2, No.2. pp. 367-390, Jun. 2007.
pdf

Y. Mori and M. Nakazawa. *A New Simple Etiological Model of Human Death*

Jinkougaku Kenkyuu (The Journal of Population Studies) (33) Nov. 2003.

Y. Mori.