Calabi-Simons Professor in Mathematics and Biology
Department of Mathematics
Department of Biology
School of Arts and Sciences
University of Pennsylvania
email: y1mori@sas.upenn.edu
Office: DRL 4N20 (Math), Levin 352 (Biology)
CV: pdf
Mathematical Biology, Physiology and Biophysics.
Applied and Numerical Analysis.
Fall 2020
BIOL/AMCS 568
E. Garcia-Juarez, Y. Mori and R. Strain The Peskin Problem with Viscosity Contrast
submitted.
Q. Su, A. McAvoy, Y. Mori and J. B. Plotkin
Evolution of prosocial behavior in multilayer populations
submitted.
Y. Mori and L. Ohm
Accuracy of slender body theory in approximating force exerted by thin fiber on viscous fluid
submitted.
J. Ma, M. Do, M. A. Le Gros, C. S. Peskin, C. A. Larabell, Y. Mori, and S. A. Isaacson,
Strong Intracellular Signal Inactivation Produces Sharper and more Robust Signaling from Cell Membrane to Nucleus
PLOS Computational Biology, published online, 2020.
Y. Li, K. Konstantopoulos, R. Zhao, Y. Mori and S. X. Sun
The importance of water and hydraulic pressure in cell dynamics
Journal of Cell Science, 133(20), 2020.
Y. Mori and L. Ohm
An error bound for the slender body approximation of a thin, rigid fiber sedimenting in Stokes flow
Research in Mathematical Sciences, 7(8), 2020.
pdf
Y. Li, L. Yao, Y. Mori and S.X. Sun
On the energy efficiency of cell migration in diverse physical environments
Proceedings of the National Academy of Sciences, 116 (48) 23894-23900, 2019.
A. Tuttle, J. Riera-Diaz and Y. Mori
A computational study on the role of glutamate and NMDA receptors on cortical spreading depression using a multidomain electrodiffusion model
PLOS Computational Biology, 15 (12):e1007455, 2019.
pdf
Y. Mori, L. Ohm and D. Spirn,
Theoretical Justification and Error Analysis for Slender Body Theory with Free Ends
Archive for Rational Mechanics and Analysis, 235 (3), 1905-1978, 2019.
pdf
Y. Mori, L. Ohm and D. Spirn, Theoretical justification and error analysis for slender body theory
Communications on Pure and Applied Mathematics, 73 (6), 1235-1314, 2020.
pdf
Y.N. Young, Y. Mori and M. Miksis, Slightly deformable Darcy drop in linear flows
Physical Reviews Fluids, 4, 063601, 2019.
A. Moshkforoush, P.A. Valdes-Hernandez, D.E. Rivera, Y. Mori and J. Riera-Diaz,
waveCSD: A method for estimating transmembrane currents originated from propagating neuronal activity
in the neocortex: Application to study cortical spreading depression
Journal of Neuroscience Methods 307, 106-124, 2018.
Y. Mori and Y.N. Young, From Electrodiffusion Theory to the Electrohydrodynamics of Leaky Dielectrics through the Weak Electrolyte Limit
Journal of Fluid Mechanics 855, 67-130 2018.
pdf
Y. Mori, A. Rodenberg and D. Sprin, Well-posedness and global behavior of the Peskin problem
of an elastic filament in Stokes flow
Communications on Pure and Applied Mathematics, 72 (5), 887-980, 2018.
pdf
L. Yao and Y. Mori, A numerical method for osmotic water flow and
solute diffusion with deformable membrane boundaries in two spatial
dimension
Journal of Computational Physics, 350, 728-746, 2017.
pdf
L. Yao, M.C. Calderer, Y. Mori and R. Siegel, Rhythmogenic Drug Delivery: Modeling, Analysis and Numerical Simulation
SIAM Journal of Applied Mathematics, 77(2), 565-592, 2017.
pdf
Rosemary O'Connell and Y. Mori Effects of Glia in a Triphasic
Continuum Model of Cortical Spreading Depression
Bulletin of Mathematical Biology, 78 (10), 1943-1967, 2016.
pdf
N. Wei, Y. Mori and E.G. Talkacheva, The dual effect of ephaptic
coupling on cardiac conduction with heterogeneous expression of
connexin 43
Journal of Theoretical Biology, 397, 103-114, 2016.
pdf
Y. Mori and H. Matano Stability of Front Solutions of the Bidomain Equation
Communications on Pure and Applied Mathematics,
69(12), 2364-2426, 2016.
pdf
A. Stinchcombe, Y. Mori and C.S. Peskin Well-Posed Treatment of Space-Charge Layers in the Electroneutral Limit of Electrodiffusion
Communications on Pure and Applied Mathematics, 69, 2221-2249, 2016.
pdf
Y. Li, Y. Mori and S. Sun Flow-driven cell migraion under external electric fields
Physical Review Letters, 115(26), 268101, 2015.
pdf
Y. Mori A multidomain model for ionic electrodiffusion and osmosis
with an application to cortical spreading depression
Physica D, Nonlinear Phenomena, 308, 94-108, 2015.
pdf
N. Wei, Y. Mori, and E.G. Talkacheva, The role of short term memory and conduction velocity restitution in alternans formation
Journal of Theoretical Biology, 367, 21-28, 2015.
pdf
T. Fai, B Griffith, Y. Mori and C.S. Peskin, Immersed Boundary Method for Variable Viscosity and Variable Density Problems Using Fast Constant-Coefficient Linear Solvers II: Theory
SIAM. J. Sci. Comput., 36, B589-B621, 2014.
pdf
H. Chen, M.C. Calderer and Y. Mori, Analysis and Simulation of a model of polyelectrolyte gel in one spatial dimension
Nonlinearity, 27, 1241-1285, 2014.pdf
Stephen D. McIntyre, Virendra Kakade, Yoichiro Mori, Elena G. Tolkacheva, Heart rate variability and alternans formation in the heart: the role of feedback in cardiac dynamics
Journal of Theoretical Biology, 350, 90-97, 2014.
pdf
Y. Liu and Y. Mori, L^p convergence of the Immersed Boundary Method
SIAM. J. Num. Anal., 52, 1, 496-514, 2014.
pdf
T. Fai, B Griffith, Y. Mori and C.S. Peskin, Immersed Boundary Method for Variable Viscosity and Variable Density Problems Using Fast Constant-Coefficient Linear Solvers I: Numerical Method and Results
SIAM. J. Sci. Comput., 35, B1132-B1161, 2013.pdf
Y. Mori, H. Chen, C. Micek and M.C. Calderer, A dynamic model of polyelectrolyte gels
SIAM Journal of Applied Mathematics, 73, 104-133, 2013.
pdf
Y. Liu and Y. Mori, Properties of discrete delta functions and local convergence of the immersed boundary method
SIAM Journal of Numerical Analysis, 50, 2986-3015, 2012.
pdf
Y. Mori, Mathematical Properties of Pump-Leak Models of Cell Volume Control and Electrolyte Balance
Journal of Mathematical Biology, Vol. 64, No. 5, p873-916, 2012,
Erratum, ibid.
pdf
(Typographical errors introduced by publisher corrected in Erratum.)
Y. Mori, C. Liu and R.S. Eisenberg,
A Model of Electrodiffusion and Osmotic Water Flow and its Energetic Structure
Physica D: Nonlinear phenomena, 240, 1835-1852, 2011.
pdf
Y. Mori, A. Jilkine and L. Edelstein-Keshet,
Asymptotic and bifurcation analysis of wave-pinning in a reaction-diffusion model of
cell polarization
SIAM J. Appl. Math. 71, 1401-1427, 2011.
pdf
H. Matano and Y. Mori,
Global existence and uniqueness of a three-dimensional model of cellular electrophysiology
Discrete and Continuous Dynamical Systems (DCDS-A),
Vol. 29, No. 4, 1573-1636, 2011.
pdf
M. Brera, J.W. Jerome, Y. Mori and R. Sacco,
A Conservative and monotone mixed-hybridized finite element approximation of transport problems in heterogeneous domains
Computer Methods in Applied Mechanics and Engineering,
Vol. 199, 2709-2720, 2010.
pdf
Y. Mori and C.S. Peskin. A Numerical Method for Cellular Electrophysiology
based on the Electrodiffusion Equations with Internal Boundary Conditions
at Internal Membranes
Communications in Applied Mathematics and Computational Science
Vol 4, No. 1, 85-134, 2009.
pdf
Y. Mori and C.S. Peskin.
A universal programmable fiber architecture
for the representation of a general incompressible linearly
elastic material as a fiber-reinforced fluid
Advances in Applied Mathematics
Volume 43, No. 1, pp. 75-100, July 2009.
pdf
Y. Mori, G.I. Fishman and C.S. Peskin.
Ephaptic conduction in a cardiac strand model
with 3D electrodiffusion.
Proc. Natl. Acad. Sci., Vol. 105, No. 17, pp. 6463-6468, 2008.
pdf
Y. Mori, A. Jilkine and L. Keshet. Wave-pinning and Cell Polarity from a
Bistable Reaction-diffusion System
Biophysical Journal, Vol. 94, 3684-3697, 2008.
pdf
Y. Mori. Convergence Proof of the Velocity Field for a Stokes Flow Immersed Boundary Method
Communications on Pure and Applied Mathematics, Vol. 61, no. 9, pp. 1213-1263, 2008.
pdf
Y. Mori and C.S. Peskin. Implicit Second Order Immersed Boundary Methods with Boundary Mass
Computational Methods in Applied Mechanics and Engineering, Vol. 197, pp. 2049-2067, Apr.
2008.
pdf
Y. Mori, J.W. Jerome and C.S. Peskin.
A Three-Dimensional Model of Cellular Electrical Activity
Bulletin of the Institute of Mathematics, Academia Sinica Volume 2, No.2. pp. 367-390, Jun. 2007.
pdf
Y. Mori and M. Nakazawa. A New Simple Etiological Model of Human Death
Jinkougaku Kenkyuu (The Journal of Population Studies) (33) Nov. 2003.